[INFO] cloning repository https://github.com/msinclair-py/rust-simulation-tools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/msinclair-py/rust-simulation-tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmsinclair-py%2Frust-simulation-tools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmsinclair-py%2Frust-simulation-tools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 19a6f3cf808deb61fa9ab7fe04aaac592d8c50aa
[INFO] testing msinclair-py/rust-simulation-tools against master#f9988fefd3add01f414f52b414308e7872622fee for pr-155114
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmsinclair-py%2Frust-simulation-tools" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/msinclair-py/rust-simulation-tools
[INFO] finished tweaking git repo https://github.com/msinclair-py/rust-simulation-tools
[INFO] tweaked toml for git repo https://github.com/msinclair-py/rust-simulation-tools written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/msinclair-py/rust-simulation-tools on toolchain f9988fefd3add01f414f52b414308e7872622fee
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/msinclair-py/rust-simulation-tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pyo3-macros v0.22.6
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[INFO] [stderr]   Downloaded pyo3-ffi v0.22.6
[INFO] [stderr]   Downloaded clap v4.5.56
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 34ec1bd0ca0667d23e16ea6f437c7d8e5c0b79ce0550084f4a19c70677b26347
[INFO] running `Command { std: "docker" "start" "-a" "34ec1bd0ca0667d23e16ea6f437c7d8e5c0b79ce0550084f4a19c70677b26347", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "34ec1bd0ca0667d23e16ea6f437c7d8e5c0b79ce0550084f4a19c70677b26347", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "34ec1bd0ca0667d23e16ea6f437c7d8e5c0b79ce0550084f4a19c70677b26347", kill_on_drop: false }`
[INFO] [stdout] 34ec1bd0ca0667d23e16ea6f437c7d8e5c0b79ce0550084f4a19c70677b26347
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e59b59e4083b62c6a2eefc3e48ab859331579214a16f8e50e4fd7300aab05599
[INFO] running `Command { std: "docker" "start" "-a" "e59b59e4083b62c6a2eefc3e48ab859331579214a16f8e50e4fd7300aab05599", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
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[INFO] [stderr]    Compiling rawpointer v0.2.1
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[INFO] [stderr]    Compiling libc v0.2.176
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling unindent v0.2.4
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[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
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[INFO] [stderr]    Compiling rustc-hash v2.1.1
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[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling pyo3-build-config v0.22.6
[INFO] [stderr]    Compiling wide v0.7.33
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[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling simba v0.8.1
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[INFO] [stderr]    Compiling pyo3 v0.22.6
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
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[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling pyo3-macros v0.22.6
[INFO] [stderr]    Compiling numpy v0.22.1
[INFO] [stderr]    Compiling rst-core v0.2.1 (/opt/rustwide/workdir/crates/core)
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[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 31.81s
[INFO] running `Command { std: "docker" "inspect" "e59b59e4083b62c6a2eefc3e48ab859331579214a16f8e50e4fd7300aab05599", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e59b59e4083b62c6a2eefc3e48ab859331579214a16f8e50e4fd7300aab05599", kill_on_drop: false }`
[INFO] [stdout] e59b59e4083b62c6a2eefc3e48ab859331579214a16f8e50e4fd7300aab05599
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c8f2f009f5538ded9451900e70ca1ca142d57a0d3e111b45ac4f2d33484b9fc5
[INFO] running `Command { std: "docker" "start" "-a" "c8f2f009f5538ded9451900e70ca1ca142d57a0d3e111b45ac4f2d33484b9fc5", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.36
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling zmij v1.0.17
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling zerocopy-derive v0.8.36
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling is-terminal v0.4.17
[INFO] [stderr]    Compiling oorandom v11.1.5
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling clap_builder v4.5.56
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling clap v4.5.56
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling rst-core v0.2.1 (/opt/rustwide/workdir/crates/core)
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling rst-mmpbsa v0.1.0 (/opt/rustwide/workdir/crates/mmpbsa)
[INFO] [stderr]    Compiling rst-bindings v0.2.1 (/opt/rustwide/workdir/crates/bindings)
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 37.38s
[INFO] running `Command { std: "docker" "inspect" "c8f2f009f5538ded9451900e70ca1ca142d57a0d3e111b45ac4f2d33484b9fc5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c8f2f009f5538ded9451900e70ca1ca142d57a0d3e111b45ac4f2d33484b9fc5", kill_on_drop: false }`
[INFO] [stdout] c8f2f009f5538ded9451900e70ca1ca142d57a0d3e111b45ac4f2d33484b9fc5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 79b2104cca4f9282024eda158e9d1cbeb838cb2ee45d0597add56b27b3718b0f
[INFO] running `Command { std: "docker" "start" "-a" "79b2104cca4f9282024eda158e9d1cbeb838cb2ee45d0597add56b27b3718b0f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rust_simulation_tools-d8127b1930f8c16e)
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rst_core-22a65e35840a97f6)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 82 tests
[INFO] [stdout] test fingerprint::tests::test_cell_list_find_neighbors ... ok
[INFO] [stdout] test fingerprint::tests::test_compute_residue_energy ... ok
[INFO] [stdout] test fingerprint::tests::test_empty_cell_list ... ok
[INFO] [stdout] test fingerprint::tests::test_residue_data_creation ... ok
[INFO] [stdout] test fingerprint::tests::test_rf_energy_beyond_cutoff ... ok
[INFO] [stdout] test sasa::tests::test_fibonacci_sphere ... ok
[INFO] [stdout] test fingerprint::tests::test_reaction_field_params ... ok
[INFO] [stdout] test sasa::tests::test_vdw_radii ... ok
[INFO] [stdout] test selection::ast::tests::test_range_spec ... ok
[INFO] [stdout] test selection::ast::tests::test_glob_star ... ok
[INFO] [stdout] test selection::ast::tests::test_range_spec_inclusive ... ok
[INFO] [stdout] test selection::ast::tests::test_range_spec_half_open ... ok
[INFO] [stdout] test sasa::tests::test_kdtree_construction ... ok
[INFO] [stdout] test selection::eval::tests::test_select_index ... ok
[INFO] [stdout] test selection::eval::tests::test_select_backbone ... ok
[INFO] [stdout] test fingerprint::tests::test_partner_data_creation ... ok
[INFO] [stdout] test selection::eval::tests::test_select_negative_charge ... ok
[INFO] [stdout] test selection::ast::tests::test_glob_question ... ok
[INFO] [stdout] test selection::ast::tests::test_glob_exact ... ok
[INFO] [stdout] test selection::eval::tests::test_select_none ... ok
[INFO] [stdout] test selection::eval::tests::test_select_not ... ok
[INFO] [stdout] test selection::eval::tests::test_select_resid ... ok
[INFO] [stdout] test selection::eval::tests::test_select_resid_half_open ... ok
[INFO] [stdout] test selection::eval::tests::test_select_resid_range ... ok
[INFO] [stdout] test fingerprint::tests::test_cell_list_creation ... ok
[INFO] [stdout] test selection::eval::tests::test_resid_vs_resindex_equivalence ... ok
[INFO] [stdout] test selection::eval::tests::test_select_all ... ok
[INFO] [stdout] test selection::eval::tests::test_select_and ... ok
[INFO] [stdout] test selection::eval::tests::test_select_hydrogen ... ok
[INFO] [stdout] test selection::eval::tests::test_select_resindex_half_open ... ok
[INFO] [stdout] test selection::eval::tests::test_select_resname ... ok
[INFO] [stdout] test selection::eval::tests::test_select_sidechain ... ok
[INFO] [stdout] test selection::eval::tests::test_select_water ... ok
[INFO] [stdout] test selection::eval::tests::test_select_within ... ok
[INFO] [stdout] test selection::eval::tests::test_within_requires_coordinates ... ok
[INFO] [stdout] test selection::eval::tests::test_select_name_glob ... ok
[INFO] [stdout] test selection::eval::tests::test_select_resindex_range ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_convenience ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_complex ... ok
[INFO] [stdout] test selection::eval::tests::test_select_resindex ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_name ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_parens ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_negative_numeric ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_half_open_colon ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_resid_range ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_resindex_range ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_to_keyword ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_and_or ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_within ... ok
[INFO] [stdout] test selection::selection::tests::test_empty_selection ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_difference ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_resid_half_open ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_from_indices ... ok
[INFO] [stdout] test selection::eval::tests::test_complex_expression ... ok
[INFO] [stdout] test selection::eval::tests::test_select_mass ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_intersection_preserves_positions ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_intersection ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_set_positions ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_multiple_residues ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_total_mass ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_total_charge ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_union ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_union_positions ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_preserves_order ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_with_positions ... ok
[INFO] [stdout] test selection::token::tests::test_basic_tokenize ... ok
[INFO] [stdout] test selection::selection::tests::test_selection_without_positions ... ok
[INFO] [stdout] test util::tests::test_distance_squared ... ok
[INFO] [stdout] test sasa::tests::test_single_atom ... ok
[INFO] [stdout] test selection::token::tests::test_comparison_ops ... ok
[INFO] [stdout] test fingerprint::tests::test_compute_fingerprints ... ok
[INFO] [stdout] test selection::token::tests::test_numeric_tokens ... ok
[INFO] [stdout] test selection::eval::tests::test_select_or ... ok
[INFO] [stdout] test sasa::tests::test_kdtree_query_radius ... ok
[INFO] [stdout] test selection::eval::tests::test_select_name ... ok
[INFO] [stdout] test selection::eval::tests::test_select_protein ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_not ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_numeric ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_resid_comma_list ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_resindex ... ok
[INFO] [stdout] test selection::parser::tests::test_parse_to_vs_dash_equivalence ... ok
[INFO] [stdout] test selection::token::tests::test_range_tokens ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 82 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.20s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rst_mmpbsa-70951935a9121497)
[INFO] [stdout] 
[INFO] [stdout] running 28 tests
[INFO] [stdout] test binding::tests::test_binding_energy_single_frame ... ok
[INFO] [stdout] test decomposition::tests::test_decomposition_sums_to_total ... ok
[INFO] [stdout] test entropy::tests::test_interaction_entropy_insufficient_frames ... ok
[INFO] [stdout] test entropy::tests::test_interaction_entropy_constant_energy ... ok
[INFO] [stdout] test entropy::tests::test_jacobi_eigenvalues_identity ... ok
[INFO] [stdout] test entropy::tests::test_interaction_entropy_with_fluctuation ... ok
[INFO] [stdout] test entropy::tests::test_quasi_harmonic_single_mode ... ok
[INFO] [stdout] test gb_energy::tests::test_compute_kappa ... ok
[INFO] [stdout] test gb_energy::tests::test_gb_energy_with_reference_data ... ok
[INFO] [stdout] test mdcrd::tests::test_read_mdcrd ... ok
[INFO] [stdout] test mm_energy::tests::test_parse_and_compute ... ok
[INFO] [stdout] test entropy::tests::test_jacobi_eigenvalues_known ... ok
[INFO] [stdout] test pb_grid::tests::test_auto_grid_odd_dims ... ok
[INFO] [stdout] test pb_grid::tests::test_interpolation_at_grid_point ... ok
[INFO] [stdout] test gb_energy::tests::test_kappa_zero_salt ... ok
[INFO] [stdout] test subsystem::tests::test_subtopology_preserves_atom_count ... ok
[INFO] [stdout] test sa_energy::tests::test_sa_with_reference_topology ... ok
[INFO] [stdout] test subsystem::tests::test_extract_subtopology ... ok
[INFO] [stdout] test pb_solver::tests::test_restrict_prolongate_identity ... ok
[INFO] [stdout] test sa_energy::tests::test_single_atom_sa ... ok
[INFO] [stdout] test pb_grid::tests::test_charge_conservation ... ok
[INFO] [stdout] test mm_energy::tests::test_bond_energy ... ok
[INFO] [stdout] test mm_energy::tests::test_angle_energy ... ok
[INFO] [stdout] test gb_energy::tests::test_single_ion_gb ... ok
[INFO] [stdout] test mm_energy::tests::test_dihedral_energy ... ok
[INFO] [stdout] test pb_solver::tests::test_sor_convergence ... ok
[INFO] [stdout] test pb_solver::tests::test_multigrid_convergence ... ok
[INFO] [stdout] test pb_energy::tests::test_born_ion_pb has been running for over 60 seconds
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "79b2104cca4f9282024eda158e9d1cbeb838cb2ee45d0597add56b27b3718b0f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "79b2104cca4f9282024eda158e9d1cbeb838cb2ee45d0597add56b27b3718b0f", kill_on_drop: false }`
[INFO] [stdout] 79b2104cca4f9282024eda158e9d1cbeb838cb2ee45d0597add56b27b3718b0f
